This is the complete list of members for vg::BandedGlobalAligner< IntType >::BAMatrix, including all inherited members.

alignment	vg::BandedGlobalAligner< IntType >::BAMatrix	private
AltTracebackStack class	vg::BandedGlobalAligner< IntType >::BAMatrix	friend
BABuilder class	vg::BandedGlobalAligner< IntType >::BAMatrix	friend
BAMatrix(Alignment &alignment, handle_t node, int64_t top_diag, int64_t bottom_diag, const vector< BAMatrix * > &seeds, int64_t cumulative_seq_len)	vg::BandedGlobalAligner< IntType >::BAMatrix
BandedGlobalAligner class	vg::BandedGlobalAligner< IntType >::BAMatrix	friend
bottom_diag	vg::BandedGlobalAligner< IntType >::BAMatrix	private
cumulative_seq_len	vg::BandedGlobalAligner< IntType >::BAMatrix	private
fill_matrix(const HandleGraph &graph, int8_t score_mat, int8_t nt_table, int8_t gap_open, int8_t gap_extend, bool qual_adjusted, IntType min_inf)	vg::BandedGlobalAligner< IntType >::BAMatrix
init_traceback_indexes(const HandleGraph &graph, int64_t &i, int64_t &j)	vg::BandedGlobalAligner< IntType >::BAMatrix
insert_col	vg::BandedGlobalAligner< IntType >::BAMatrix	private
insert_row	vg::BandedGlobalAligner< IntType >::BAMatrix	private
match	vg::BandedGlobalAligner< IntType >::BAMatrix	private
node	vg::BandedGlobalAligner< IntType >::BAMatrix	private
print_band(const HandleGraph &graph, matrix_t which_mat)	vg::BandedGlobalAligner< IntType >::BAMatrix	private
print_full_matrices(const HandleGraph &graph)	vg::BandedGlobalAligner< IntType >::BAMatrix
print_matrix(const HandleGraph &graph, matrix_t which_mat)	vg::BandedGlobalAligner< IntType >::BAMatrix	private
print_rectangularized_bands(const HandleGraph &graph)	vg::BandedGlobalAligner< IntType >::BAMatrix
seeds	vg::BandedGlobalAligner< IntType >::BAMatrix	private
top_diag	vg::BandedGlobalAligner< IntType >::BAMatrix	private
traceback(const HandleGraph &graph, BABuilder &builder, AltTracebackStack &traceback_stack, int64_t &i, int64_t &j, matrix_t &mat, bool &in_lead_gap, const int8_t score_mat, const int8_t nt_table, const int8_t gap_open, const int8_t gap_extend, const bool qual_adjusted, IntType const min_inf)	vg::BandedGlobalAligner< IntType >::BAMatrix
traceback_over_edge(const HandleGraph &graph, BABuilder &builder, AltTracebackStack &traceback_stack, int64_t &i, int64_t &j, matrix_t &mat, bool &in_lead_gap, int64_t &node_id, const int8_t score_mat, const int8_t nt_table, const int8_t gap_open, const int8_t gap_extend, const bool qual_adjusted, IntType const min_inf)	vg::BandedGlobalAligner< IntType >::BAMatrix
~BAMatrix()	vg::BandedGlobalAligner< IntType >::BAMatrix